Where's the evidence that it's easy to hold them even after they've been cooled? If they were able to hold some as long as 1000 seconds, isn't that because they did manage to cool them, but the fact that they didn't manage to hold them longer than 1000 seconds suggests that even after that much cooling they weren't easy to hold?
Big difference in creating enough energy to produce anti-hydrogen versus an anti-particle like an anti-proton or positron. They create positron beams to kill cancers these days, I'm somewhat skeptical that the energy costs would necessarily outweigh the benefits in T/W when it came to a vehicle with an onboard nuclear reactor or large enough solar panel arrays. MSNWR and Gas-Dynamic fusion rocket motors are essentially giant linear accelerators with a plasma injector. Okay, MSNWR uses a liner so it's more like a rail gun with a z-machine at the end but you get the idea. The method mentioned using photon accelerators not only produces larger positron yields but does so with less energy than CERN's atom colliders. I'm just saying somebody should crunch the numbers if you can get better Isp and T/W than even something like HiPEP it might be worthwhile.